[1] Amann, RI, Ludwig, W, Schleifer, KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation[J]. Microbiological reviews, 1995, 59(1):143-169. [2] 廖万清, 吴绍熙. 病原真菌生物学研究与应用[M]. 北京: 化学工业出版社, 2006. [3] Frank, DN, Spiegelman, GB, Davis, W, et al. Culture-independent molecular analysis of microbial constituents of the healthy human outer ear[J]. J Clin Microbiol, 2003, 41(1):295-303. [4] Zhang, E, Tanaka, T, Tajima, M, et al. Characterization of the skin fungal microbiota in patients with atopic dermatitis and in healthy subjects[J]. Microbiol Immunol, 2011, 55(9):625-632. [5] Amann, RI, Ludwig, W, Schleifer, KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation[J]. Microbiol Rev, 1995, 59(1):143-169. [6] Rasi, A, Naderi, R, Behzadi, AH, et al. Malassezia yeast species isolated from Iranian patients with pityriasis versicolor in a prospective study[J]. Mycoses, 2010, 53(4):350-355. [7] Findley, K, Oh, J, Yang, J, et al. Topographic diversity of fungal and bacterial communities in human skin[J]. Nature, 2013, 498(7454):367-372. [8] Pace, NR. A molecular view of microbial diversity and the biosphere[J]. Science, 1997, 276(5313):734-740. [9] 周桔, 雷霆. 土壤微生物多样性影响因素及研究方法的现状与展望[J]. 生物多样性, 2007, 15(3):306-311. [10] Pace, NR. A molecular view of microbial diversity and the biosphere[J]. Science (New York, N.Y.), 1997, 276(5313):734-740. [11] PD, S, JR, M. Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces[J]. ISME J, 2008, 2(12):1183-1193. [12] Fischer, SG, Lerman, LS. Length-independent separation of DNA restriction fragments in two-dimensional gel electrophoresis[J]. Cell, 1979, 16(1):191-200. [13] Fischer, SG, Lerman, LS. DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory[J]. P Proc Natl Acad Sci U S A, 1983, 80(6):1579-1583. [14] Muyzer, G, de Waal, EC, Uitterlinden, AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA[J]. Appl Environ Microbiol, 1993, 59(3):695-700. [15] Kim, TW, Lee, J-H, Park, M-H, et al. Analysis of Bacterial and Fungal Communities in Japanese-and Chinese-Fermented Soybean Pastes Using Nested PCR-DGGE[J]. Curr Microbiol, 2010, 60(5):315-320. [16] Weerasekera, MM, Sissons, CH, Wong, L, et al. Use of denaturing gradient gel electrophoresis (DGGE) for the identification of mixed oral yeasts in human saliva[J]. J Med Microbiol, 2013, 62(Pt2):319-330. [17] Curlevski, NJA, Xu, Z, Anderson, IC, et al. Soil fungal communities differ in native mixed forest and adjacent Araucaria cunninghamⅡ plantations in subtropical Australia[J]. J. Soils Sediments, 2010, 10(7):1278-1288. [18] Li, X-R, Ma, E-B, Yan, L-Z, et al. Bacterial and fungal diversity in the traditional Chinese liquor fermentation process[J]. Int J Food Microbiol, 2011, 146(1):31-37. [19] Li, X-R, Ma, E-B, Yan, L-Z, et al. Bacterial and fungal diversity in the starter production process of Fen liquor, a traditional Chinese liquor[J]. J Microbiol, 2013, 51(4):430-438. [20] Li, H, Takeshita, T, Furuta, M, et al. Molecular characterization of fungal populations on the tongue dorsum of institutionalized elderly adults[J]. Oral Diseases, 2012, 18(8):771-777. [21] Lepere, C, Masquelier, S, Mangot, J-F, et al. Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach[J]. ISME J, 2010, 4(12):1509-1519. [22] Nicholson, MJ, McSweeney, CS, Mackie, RI, et al. Diversity of anaerobic gut fungal populations analysed using ribosomal ITS1 sequences in faeces of wild and domesticated herbivores[J]. Anaerobe, 2010, 16(2):66-73. [23] Gao, G, Yin, D, Chen, S, et al. Effect of biocontrol agent Pseudomonas fluorescens 2P24 on soil fungal community in cucumber rhizosphere using T-RFLP and DGGE[J]. PloS ONE, 2012, 7(2):e31806. [24] 曹钰, 陆健, 方华, 等. 绍兴黄酒麦曲中真菌多样性的研究[J]. 食品科学, 2008, 29(3):277-282. [25] 贺纪正, 袁超磊, 沈菊培, 等. 土壤宏基因组学研究方法与进展[J]. 土壤学报, 2012, 49(1):155-164. [26] Hamady, M, Walker, JJ, Harris, JK, et al. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex[J]. Nat Methods, 2008, 5(3):235-237. [27] Delhaes, L, Monchy, S, Frealle, E, et al. The airway microbiota in cystic fibrosis: a complex fungal and bacterial community-implications for therapeutic management[J]. PloS ONE, 2012, 7(4): e36313. [28] Hoffmann, C, Dollive, S, Grunberg, S, et al. Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents[J]. PloS ONE, 2013, 8(6): e66019. [29] Handelsman, J, Rondon, MR, Brady, SF, et al. Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products[J]. Chem Biol, 1998, 5(10):R245-R249. [30] Karlsson, FH, Tremaroli, V, Nookaew, I, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control[J]. Nature, 2013, 498(7452):99-103. [31] Hilty, M, Qi, W, Brugger, SD, et al. Nasopharyngeal microbiota in infants with acute otitis media[J]. J Infect Dis, 2012, 205(7):1048-1055. [32] Illeghems, K, De Vuyst, L, Papalexandratou, Z, et al. Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity[J]. PloS ONE, 2012, 7(5): e38040. [33] Cardoso, AM, Cavalcante, JJV, Cantao, ME, et al. Metagenomic Analysis of the Microbiota from the Crop of an Invasive Snail Reveals a Rich Reservoir of Novel Genes[J]. PloS ONE, 2012, 7(11):e48505. |